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An Introduction to Computer Intensive Methods for Genetic Analysis (2016)

ECTS credits: 4

 

Course parameters:
Language: English
Level of course: PhD course
Time of year: September 2016
No. of contact hours/hours in total incl. preparation, assignment(s) or the like [please indicate both]:
No contact hours: 42 (teaching + exercises)
Hours in total: 32 (preparation – 4 days reading) + 24  final assignment) + 42 (contact hours) = 98
Capacity limits: 25 students

 

Objectives of the course: 
The objective of the course is to provide first year PhD students in statistical genetics, that have a biological background and limited statistical expertise, with the basic tools needed to perform computer-based genetic analyses.

 

Learning outcomes and competences:
At the end of the course, the student should be able to:

  • understand the statistical genetics literature and to implement the techniques needed for their own research projects.

Compulsory programme:

  • Attendance of lectures
  • Completion of exercise assignments
  • Completion of final project

Course contents:

  1. Likelihood
  2. Computing the likelihood
  3. Bayesian methods
  4. Bayesian Markov chain Monte Carlo method in practice

 

Prerequisites:

  • Have an undergraduate degree in biology, agriculture or similar areas or in statistics or related field.
  • Have taken an introductory course in statistics
  • Have basic knowledge of calculus
  • Have minimum programming skills; for example with R

Name of lecturers:

  • Daniel Sorensen
  • Ole Christensen
  • Luc Janss
  • Peter Sørensen

Type of course/teaching methods:

Lectures + computer exercises

 

Literature:
Course notes with the relevant literature will be provided to the students

 

Course homepage:
None yet

 

Course assessment:
Final project report to be evaluated upon completion

 

Provider:
Department of Molecular Biology and Genetics, Center for Quantitative Genetics and Genomics

 

Special comments on this course:
None

 

Time:  

  • Monday, 5 September to Wednesday, 7 September 2016
  • Monday, 19 September to Wednesday, 21 September 2016

Place: 
Foulum, 8830 Tjele

 

Registration:
Deadline for registration is Friday, 19 August 2016.
Sign up here: https://auws.au.dk/forms/frm1Arrangement.aspx?value=636034861628346912&id=29476

 

If you have any questions, please contact Daniel Sorensen, e-mail: daniel.alberto.sorensen@gmail.com

Comments on content: 
Revised 16.05.2017